* Small javadoc additions in Application

* Fix animation not working for Blender 2.5+ Ogre3D models 

git-svn-id: https://jmonkeyengine.googlecode.com/svn/trunk@8538 75d07b2b-3a1a-0410-a2c5-0572b91ccdca

engine/src/core/com/jme3/animation/SkeletonControl.java

@@ -99,10 +99,8 @@ public class SkeletonControl extends AbstractControl implements Cloneable {
             Mesh childSharedMesh = geom.getUserData(UserData.JME_SHAREDMESH);
             
             if (childSharedMesh != null){
-                
                 // Don't bother with non-animated shared meshes
                 if (isMeshAnimated(childSharedMesh)){
-                    
                     // child is using shared mesh,
                     // so animate the shared mesh but ignore child
                     if (sharedMesh == null){
@@ -147,10 +145,12 @@ public class SkeletonControl extends AbstractControl implements Cloneable {
             // if hardware skinning is supported, the matrices and weight buffer
             // will be sent by the SkinningShaderLogic object assigned to the shader
             for (int i = 0; i < targets.length; i++) {
-                // only update targets with bone-vertex assignments
-                if (targets[i].getBuffer(Type.BoneIndex) != null) {
+				// NOTE: This assumes that code higher up
+				// Already ensured those targets are animated
+				// otherwise a crash will happen in skin update
+                //if (isMeshAnimated(targets[i])) {
                     softwareSkinUpdate(targets[i], offsetMatrices);
-                }
+                //}
             }
 
             wasMeshUpdated = true;
@@ -195,11 +195,11 @@ public class SkeletonControl extends AbstractControl implements Cloneable {
         clone.setSpatial(clonedNode);
 
         clone.skeleton = ctrl.getSkeleton();
-        Mesh[] meshes = new Mesh[targets.length];
-        for (int i = 0; i < meshes.length; i++) {
-            meshes[i] = ((Geometry) clonedNode.getChild(i)).getMesh();
-        }
-        for (int i = meshes.length; i < clonedNode.getQuantity(); i++) {
+		// Fix animated targets for the cloned node
+        clone.targets = findTargets(clonedNode);
+
+		// Fix attachments for the cloned node
+        for (int i = 0; i < clonedNode.getQuantity(); i++) {
             // go through attachment nodes, apply them to correct bone
             Spatial child = clonedNode.getChild(i);
             if (child instanceof Node) {
@@ -214,7 +214,7 @@ public class SkeletonControl extends AbstractControl implements Cloneable {
                 }
             }
         }
-        clone.targets = meshes;
+
         return clone;
     }
 
@@ -348,7 +348,6 @@ public class SkeletonControl extends AbstractControl implements Cloneable {
                 posBuf[idxPositions++] = rz;
             }
 
-
             fvb.position(fvb.position() - bufLength);
             fvb.put(posBuf, 0, bufLength);
             fnb.position(fnb.position() - bufLength);

engine/src/core/com/jme3/app/Application.java

@@ -175,9 +175,12 @@ public class Application implements SystemListener {
     }
 
     /**
-     * Set the display settings to define the display created. Examples of
-     * display parameters include display pixel width and height,
+     * Set the display settings to define the display created.
+     * <p>
+     * Examples of display parameters include display pixel width and height,
      * color bit depth, z-buffer bits, anti-aliasing samples, and update frequency.
+     * If this method is called while the application is already running, then
+     * {@link #restart() } must be called to apply the settings to the display.
      *
      * @param settings The settings to set.
      */
@@ -460,7 +463,6 @@ public class Application implements SystemListener {
     }
 
     /**
-     * 
      * Requests the context to close, shutting down the main loop
      * and making necessary cleanup operations.
      * 
@@ -526,11 +528,12 @@ public class Application implements SystemListener {
      * Internal use only.
      */
     public void gainFocus(){
-        if (pauseOnFocus){
+        if (pauseOnFocus) {
             paused = false;
             context.setAutoFlushFrames(true);
-            if (inputManager != null)
+            if (inputManager != null) {
                 inputManager.reset();
+            }
         }
     }
 
@@ -553,7 +556,11 @@ public class Application implements SystemListener {
 
     /**
      * Enqueues a task/callable object to execute in the jME3
-     * rendering thread.
+     * rendering thread. 
+     * <p>
+     * Callables are executed right at the beginning of the main loop.
+     * They are executed even if the application is currently paused
+     * or out of focus.
      */
     public <V> Future<V> enqueue(Callable<V> callable) {
         AppTask<V> task = new AppTask<V>(callable);
@@ -625,6 +632,10 @@ public class Application implements SystemListener {
         timer.reset();
     }
 
+    /**
+     * @return The GUI viewport. Which is used for the on screen
+     * statistics and FPS.
+     */
     public ViewPort getGuiViewPort() {
         return guiViewPort;
     }